HsaEX6063194 @ hg19
Exon Skipping
Gene
ENSG00000106976 | DNM1
Description
dynamin 1 [Source:HGNC Symbol;Acc:2972]
Coordinates
chr9:130965658-130981010:+
Coord C1 exon
chr9:130965658-130965910
Coord A exon
chr9:130980510-130980583
Coord C2 exon
chr9:130980861-130981010
Length
74 bp
Sequences
Splice sites
3' ss Seq
TGACCTCCAACTCATTGCAGGGA
3' ss Score
7.83
5' ss Seq
CAGGTACGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
AGTCTGGGCGCGCGGCTGCAGCGGCGGAGCCGGAGTCGGAGCCGGGAGCGCTAGCGGCAGCCGGATCGCAGCCTGCGGGGCCCGCCGCAGCCATGGGCAACCGCGGCATGGAAGATCTCATCCCGCTGGTCAACCGGCTGCAAGACGCCTTCTCTGCCATCGGCCAGAACGCGGACCTCGACCTGCCGCAGATCGCTGTGGTGGGCGGCCAGAGCGCCGGCAAGAGCTCGGTGCTCGAGAATTTCGTAGGCAG
Seq A exon
GGACTTCTTGCCTCGAGGATCTGGCATTGTCACCCGACGTCCCCTGGTCTTGCAGCTGGTCAATGCAACCACAG
Seq C2 exon
AATATGCCGAGTTCCTGCACTGCAAGGGAAAGAAATTCACCGACTTCGAGGAGGTGCGCCTTGAGATCGAGGCCGAGACCGACAGGGTCACCGGCACCAACAAGGGCATCTCGCCGGTGCCTATCAACCTCCGCGTCTACTCGCCGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106976-'0-3,'0-1,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.059
Domain overlap (PFAM):
C1:
PF0035018=Dynamin_N=PU(11.5=37.0)
A:
PF0035018=Dynamin_N=FE(14.4=100)
C2:
PF0035018=Dynamin_N=FE(28.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCTCATCCCGCTGGTCAA
R:
CTTTCCCTTGCAGTGCAGGAA
Band lengths:
173-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)