HsaEX6063194 @ hg38
Exon Skipping
Gene
ENSG00000106976 | DNM1
Description
dynamin 1 [Source:HGNC Symbol;Acc:HGNC:2972]
Coordinates
chr9:128204822-128218731:+
Coord C1 exon
chr9:128204822-128204880
Coord A exon
chr9:128218231-128218304
Coord C2 exon
chr9:128218582-128218731
Length
74 bp
Sequences
Splice sites
3' ss Seq
TGACCTCCAACTCATTGCAGGGA
3' ss Score
7.83
5' ss Seq
CAGGTACGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
CCCTTGTCCGCAGAGGTACAGCAGTTCTGTCCAAGCCAGGTTCTGCTGCAAAACCTCAG
Seq A exon
GGACTTCTTGCCTCGAGGATCTGGCATTGTCACCCGACGTCCCCTGGTCTTGCAGCTGGTCAATGCAACCACAG
Seq C2 exon
AATATGCCGAGTTCCTGCACTGCAAGGGAAAGAAATTCACCGACTTCGAGGAGGTGCGCCTTGAGATCGAGGCCGAGACCGACAGGGTCACCGGCACCAACAAGGGCATCTCGCCGGTGCCTATCAACCTCCGCGTCTACTCGCCGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106976-'3-18,'3-14,14-18
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.002 C2=0.061
Domain overlap (PFAM):
C1:
NA
A:
PF0035018=Dynamin_N=FE(14.4=100)
C2:
PF0035018=Dynamin_N=FE(28.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGTTCTGTCCAAGCCAG
R:
TAGACGCGGAGGTTGATAGGC
Band lengths:
180-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains