GgaEX1020480 @ galGal3
Exon Skipping
Gene
ENSGALG00000004852 | E1BV15_CHICK
Description
NA
Coordinates
chr17:5687882-5699103:-
Coord C1 exon
chr17:5698871-5699103
Coord A exon
chr17:5689148-5689221
Coord C2 exon
chr17:5687882-5688031
Length
74 bp
Sequences
Splice sites
3' ss Seq
AATTTCCTCTTTCGTTGCAGGGA
3' ss Score
10.05
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
AGGGTCGGTACCCGCCGCTGTGAGAGCTGAAGCGGGCGGTCAGCGGGAGAGAAGAGCCACGTCGCCGCCGCCATGGGGAACCGCGGGATGGAGGATCTGATCCCGCTGGTCAACCGGCTGCAGGACGCCTTCGCCGCCATCGGGCAGAACGCTAACCTCGACCTGCCGCAGATCGCCGTGGTCGGGGGGCAGAGCGCCGGCAAGAGCTCTGTGCTGGAGAATTTCGTCGGGAG
Seq A exon
GGACTTTCTGCCACGTGGCTCTGGCATTGTGACCAGGCGTCCGCTGGTCCTGCAGCTGGTCAATGCCAGCACAG
Seq C2 exon
AGTATGGAGAATTCCTGCACTGCAAAGGAAAGAAGTTCACAGATTTTGAGGAGATCCGTTTGGAGATTGAGGCTGAAACAGACCGTGTTACTGGCTCCAACAAAGGGATTTCCCCAGTGCCCATCAACCTCAGAGTCTATTCTCCTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004852-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF0035018=Dynamin_N=PU(11.5=37.0)
A:
PF0035018=Dynamin_N=FE(14.4=100)
C2:
PF0035018=Dynamin_N=FE(28.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAACGCTAACCTCGACCTG
R:
AACACGGTCTGTTTCAGCCTC
Band lengths:
178-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]