MmuEX0015298 @ mm10
Exon Skipping
Gene
ENSMUSG00000033335 | Dnm2
Description
dynamin 2 [Source:MGI Symbol;Acc:MGI:109547]
Coordinates
chr9:21424908-21465731:+
Coord C1 exon
chr9:21424908-21425256
Coord A exon
chr9:21457503-21457576
Coord C2 exon
chr9:21465582-21465731
Length
74 bp
Sequences
Splice sites
3' ss Seq
GCTGCTTTCTCTTCTCCCAGGGA
3' ss Score
9.49
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
GTTCGCTCGGGTCGGGTGTCGCCTGAGAACCGGATGAGGCGGCGACTCTGAGGCCGAGCCGGGAGCGGGCGTCGCGGCGAAGGGGAGACCGGGCGGGCCGGCAGAGCAGAGCAGGAGGAAGCAACGGCCACAGACACATCGGAACCGAGAGTCTTAGTCGGGGGATCCGCGCGGCGGAGGCGGACACCATGGGCAACCGCGGGATGGAAGAGCTCATCCCGCTGGTTAACAAGCTGCAGGACGCCTTCAGCTCCATCGGTCAGAGCTGCCACCTGGACCTGCCGCAGATCGCCGTGGTGGGCGGCCAGAGCGCCGGCAAAAGTTCGGTGCTCGAGAACTTCGTGGGCCG
Seq A exon
GGACTTCCTTCCACGAGGATCAGGAATTGTCACCCGGAGGCCTCTCATTCTGCAGCTCATCTTTTCCAAAACAG
Seq C2 exon
AATATGCGGAATTTTTGCACTGCAAGTCCAAAAAATTTACAGACTTTGATGAAGTCCGGCAGGAGATCGAAGCAGAGACTGACCGGGTCACAGGCACCAACAAAGGCATCTCCCCTGTGCCCATCAACCTTCGGGTCTACTCACCACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033335-'0-4,'0-3,6-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.153
Domain overlap (PFAM):
C1:
PF0035018=Dynamin_N=PU(11.5=37.0)
A:
PF0035018=Dynamin_N=FE(14.4=100)
C2:
PF0035018=Dynamin_N=PD(12.5=17.6)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCAGCTCCATCGGTCAGA
R:
ATCTCCTGCCGGACTTCATCA
Band lengths:
173-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types