MmuEX0015298 @ mm9
Exon Skipping
Gene
ENSMUSG00000033335 | Dnm2
Description
dynamin 2 [Source:MGI Symbol;Acc:MGI:109547]
Coordinates
chr9:21229352-21270175:+
Coord C1 exon
chr9:21229352-21229700
Coord A exon
chr9:21261947-21262020
Coord C2 exon
chr9:21270026-21270175
Length
74 bp
Sequences
Splice sites
3' ss Seq
GCTGCTTTCTCTTCTCCCAGGGA
3' ss Score
9.49
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
GTTCGCTCGGGTCGGGTGTCGCCTGAGAACCGGATGAGGCGGCGACTCTGAGGCCGAGCCGGGAGCGGGCGTCGCGGCGAAGGGGAGACCGGGCGGGCCGGCAGAGCAGAGCAGGAGGAAGCAACGGCCACAGACACATCGGAACCGAGAGTCTTAGTCGGGGGATCCGCGCGGCGGAGGCGGACACCATGGGCAACCGCGGGATGGAAGAGCTCATCCCGCTGGTTAACAAGCTGCAGGACGCCTTCAGCTCCATCGGTCAGAGCTGCCACCTGGACCTGCCGCAGATCGCCGTGGTGGGCGGCCAGAGCGCCGGCAAAAGTTCGGTGCTCGAGAACTTCGTGGGCCG
Seq A exon
GGACTTCCTTCCACGAGGATCAGGAATTGTCACCCGGAGGCCTCTCATTCTGCAGCTCATCTTTTCCAAAACAG
Seq C2 exon
AATATGCGGAATTTTTGCACTGCAAGTCCAAAAAATTTACAGACTTTGATGAAGTCCGGCAGGAGATCGAAGCAGAGACTGACCGGGTCACAGGCACCAACAAAGGCATCTCCCCTGTGCCCATCAACCTTCGGGTCTACTCACCACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033335-'0-1,'0-0,2-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.157
Domain overlap (PFAM):
C1:
PF0035018=Dynamin_N=PU(11.5=37.0)
A:
PF0035018=Dynamin_N=FE(14.4=100)
C2:
PF0035018=Dynamin_N=PD(12.5=17.6)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCAGCTCCATCGGTCAGA
R:
ATCTCCTGCCGGACTTCATCA
Band lengths:
173-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: