DreEX0027769 @ danRer10
Exon Skipping
Gene
ENSDARG00000069937 | dnm2a
Description
dynamin 2a [Source:ZFIN;Acc:ZDB-GENE-050913-84]
Coordinates
chr3:50320272-50353739:+
Coord C1 exon
chr3:50320272-50320632
Coord A exon
chr3:50346816-50346889
Coord C2 exon
chr3:50353590-50353739
Length
74 bp
Sequences
Splice sites
3' ss Seq
TTCTCTCTGTCTTTCTGCAGGGA
3' ss Score
12.71
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
ACGAATGATTGATCCTCTGATCACAGCACGTATTACAACACATGCGCGTCTTCTGTCAGTCAGCGAGTGTTTTACGCGCCGTTTGCCTTTGACAGACCGTTCTGGAAGCGTTTGAAGGGTGGAAACTGAACACTTGAAAGTAACCCGAGCGCCCTGCTGCTGCGAGCCCGTTCCTGCGCGCTGAGAGACGGCCAGAAACCATGGGCAACCGGGGGATGGAGGAATTGATCCCCCTGATCAATAAACTCCAAGATGCTTTCAGCTCCATTGGCCAAAGTTGTAACCTGGATCTGCCGCAGATAGCAGTTGTCGGAGGACAGAGCGCCGGAAAAAGCTCCGTGCTGGAAAATTTCGTCGGCAG
Seq A exon
GGATTTCCTTCCGCGAGGCTCAGGCATCGTCACCCGCAGGCCTCTCATTCTGCAGCTAGTAAACAACAAAGCCG
Seq C2 exon
AATATGCAGAGTTCCTACACTGCAAAGGGAGGAAGTTCGTGGACTTTGATGAAGTCCGGCAGGAGATTGAAGCAGAAACCGACAGGATTACAGGCTCCAATAAGGGCATCTCTCCTATCCCCATCAACCTGAGAGTCTACTCTCCTAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069937-'0-2,'0-1,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.137
Domain overlap (PFAM):
C1:
PF0035018=Dynamin_N=PU(11.5=37.0)
A:
PF0035018=Dynamin_N=FE(14.4=100)
C2:
PF0035018=Dynamin_N=FE(28.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCCATTGGCCAAAGTTGT
R:
ATCTCCTGCCGGACTTCATCA
Band lengths:
168-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]