GgaEX6044058 @ galGal3
Exon Skipping
Gene
ENSGALG00000005180 | COL11A1
Description
NA
Coordinates
chr8:12020069-12020409:+
Coord C1 exon
chr8:12020069-12020122
Coord A exon
chr8:12020212-12020247
Coord C2 exon
chr8:12020356-12020409
Length
36 bp
Sequences
Splice sites
3' ss Seq
GCTTATACTCTTGTCCATAGGGT
3' ss Score
9.25
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
Exon sequences
Seq C1 exon
GGAATTTCTGGTCCTGCTGGTCCACTCGGACCCCCTGGTCCTCCTGGTTTACCT
Seq A exon
GGTCCCCAAGGTCCAAAAGGTTCCAAAGGATCCAGT
Seq C2 exon
GGTCCTGCTGGCCAAAAGGGTGACAGTGGTTTACCTGGCCCACCTGGTCCTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005180-'64-65,'64-64,65-65=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(14.1=50.0),PF0139113=Collagen=FE(27.0=100)
A:
PF0139113=Collagen=FE(17.5=100)
C2:
PF0139113=Collagen=FE(27.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAATTTCTGGTCCTGCTGGT
R:
GTGGGCCAGGTAAACCACTG
Band lengths:
97-133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]