GgaEX6044069 @ galGal3
Exon Skipping
Gene
ENSGALG00000005180 | COL11A1
Description
NA
Coordinates
chr8:11991476-11996160:+
Coord C1 exon
chr8:11991476-11991529
Coord A exon
chr8:11995323-11995376
Coord C2 exon
chr8:11996053-11996160
Length
54 bp
Sequences
Splice sites
3' ss Seq
CTTTTGAATGCTTGTTGCAGGGT
3' ss Score
6.34
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GGTGAAATTGGTGAACCGGGTCAAAAAGGTAGTAAAGGTGACAAGGGAGAAAAC
Seq A exon
GGTCCTCCAGGTCCACCAGGTCTCCAGGGTCCTGTTGGTGCTCCTGGCATAGCT
Seq C2 exon
GGAGGTGATGGGGAGCCAGGCCCAAGAGGTCAGCAAGGAATGTTTGGACAAAAAGGTGATGAAGGTCCTCGAGGCTTCCCTGGCCCTCCAGGCCCTATTGGCTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005180-'47-48,'47-47,48-48=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(2.9=11.1),PF0139113=Collagen=FE(21.8=100)
A:
PF0139113=Collagen=FE(21.8=100)
C2:
PF0139113=Collagen=PD(10.3=22.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGAAATTGGTGAACCGGGT
R:
GGAAGCCTCGAGGACCTTCAT
Band lengths:
133-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]