GgaEX6044075 @ galGal4
Exon Skipping
Gene
ENSGALG00000005180 | COL11A1
Description
collagen, type XI, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2186]
Coordinates
chr8:10243748-10246382:+
Coord C1 exon
chr8:10243748-10243801
Coord A exon
chr8:10244826-10244879
Coord C2 exon
chr8:10246329-10246382
Length
54 bp
Sequences
Splice sites
3' ss Seq
TATGTATTTTACAATTTCAGGGG
3' ss Score
8.44
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
GGACCACAAGGGCCTCAAGGACCTGTTGGATTTCCTGGACCAAAGGGACCCCCA
Seq A exon
GGGCCACCTGGTAAAGATGGCTTGCCTGGACATCCAGGACAGCGGGGTGAGACT
Seq C2 exon
GGATTTCAAGGAAAAACTGGTCCTCCTGGTCCTGGTGGGGTTGTTGGCCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005180-'50-51,'50-49,51-51=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0139113=Collagen=PU(12.9=61.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCACAAGGGCCTCAAGGA
R:
CCAACAACCCCACCAGGAC
Band lengths:
100-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]