GgaEX6045278 @ galGal3
Exon Skipping
Gene
ENSGALG00000005141 | HMCN1
Description
NA
Coordinates
chr8_random:374799-379381:+
Coord C1 exon
chr8_random:374799-374927
Coord A exon
chr8_random:375487-375615
Coord C2 exon
chr8_random:379031-379381
Length
129 bp
Sequences
Splice sites
3' ss Seq
TTTTGCCCTGTTGCTTACAGACA
3' ss Score
9.1
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
Exon sequences
Seq C1 exon
AAGATGTAAATGAATGCAGGCAGAATGTATGCAGGCCTGATCAGCTTTGCAAAAACACCCGTGGTGGCTATAAGTGCATTGAGCTGTGTCCAAATGGAATGACCAAAGCAGAAAATGGAACTTGTATTG
Seq A exon
ACATCAATGAGTGCCATGACAGAACCCATCAATGTCACTACAACCAGATCTGTGAGAACATGCAAGGGAGTTACCGCTGTGTGTGTCCAAGAGGGTATCGGTCACAAGGACTTGGAAGGCCTTGTGTGG
Seq C2 exon
ACATTAATGAATGTGAACAAGTGCCTAAGCCCTGTGCATTTCAGTGCACCAACACCCCTGGCAGCTTCAAGTGTATCTGTCCACCTGGACAACATTTATTAGGTGATGGGAAATCTTGTGCTGGATTGGAGAGATTGCTACATTCCGGTGCCTATTACAATATCTATAACTATGCTCAATTCTCCCCTATAAGAGACAACTATCAACCTCAACGGTCTTACAGGCACTCCTCAAACCTGTACAGCTCCTTCTCAGAGTATAGGAACAGCAGAATACCTGTCTCCAGAACTAAAAGGAGCATTAGAGAAACTTGTCCTGAAGGCTATGAGGCAAGAAATGACAGATGTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005141-'120-141,'120-139,121-141=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=93.2),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.5),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=33.9),PF126622=cEGF=PU(77.8=11.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCCTGATCAGCTTTGCAAA
R:
GGCACCGGAATGTAGCAATCT
Band lengths:
249-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]