RnoEX6044662 @ rn6
Exon Skipping
Gene
ENSRNOG00000028627 | Hmcn1
Description
hemicentin 1 [Source:RGD Symbol;Acc:1564772]
Coordinates
chr13:67813501-67819058:-
Coord C1 exon
chr13:67818933-67819058
Coord A exon
chr13:67816643-67816771
Coord C2 exon
chr13:67813501-67813851
Length
129 bp
Sequences
Splice sites
3' ss Seq
GCCTCCGTGTCTATCTGTAGACA
3' ss Score
9.17
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
ATGTGAACGAATGTAGACAGAGCGTGTGCAGACCAGACCAGCACTGTAAGAACACCCGCGGTGGCTACAAGTGCATTGATCTCTGTCCAAGTGGAATGACCAAGGCTGAGAATGGGACCTGCATTG
Seq A exon
ACATTGATGAGTGCAAAGATGGGACCCACCAATGCAGATATAACCAAATATGTGAGAACACGAGAGGCAGCTACCGGTGTGCATGCCCAAGGGGTTATCGGTCTCAAGGAGTTGGAAGACCCTGCGTTG
Seq C2 exon
ACATTAATGAATGTGACCAAGTACCTAAACCTTGTGCACATCAGTGCTCCAACAGCCCCGGCAGCTTCAAGTGTATCTGTCTGCCAGGACAACATTTATTAGGGGATGGGAAATCTTGCGCTGGATTGGAGAGGCTGTCGAGTTATGGCACTCAGTACAGTAGCTATGACCTTGAGCGGTTCTCCCCTGTGAGAAGTGGCTATCAACCTCGGCAGCATACCAGACAGCAGTCACAGCTCTACAGCTCCTACTCAGAGTATAGGAACAGCAGAGCATCTTTCTCCAGGAGTAGAAGGACTATTAGGAAAACTTGCCCTGAAGGCTCTGAGGCAAACCATGAAACATGTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028627-'122-123,'122-122,123-123=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.157
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.5),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=33.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCAAGGCTGAGAATGGGA
R:
GCCGAGGTTGATAGCCACTTC
Band lengths:
243-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]