GgaEX6047011 @ galGal3
Exon Skipping
Gene
ENSGALG00000006348 | RAPGEF3
Description
NA
Coordinates
chrE22C19W28_E50C23:454240-454819:+
Coord C1 exon
chrE22C19W28_E50C23:454240-454365
Coord A exon
chrE22C19W28_E50C23:454472-454653
Coord C2 exon
chrE22C19W28_E50C23:454729-454819
Length
182 bp
Sequences
Splice sites
3' ss Seq
CCCATCCTCTCCCACGCCAGGTG
3' ss Score
9.65
5' ss Seq
ACAGTGAGC
5' ss Score
4.69
Exon sequences
Seq C1 exon
ACCCCCCCCCCTGAGCGGCTGGGCCCCCACGTTGGCTCCTCGGACACGTTGGATCTCATCAGCTCCAAGGACCTGGCCAGCCACCTCACCGACCACGACTGGAACCTCTTCAAGAGCATCCACCAG
Seq A exon
GTGGAGATGATCCAGTACATCATGGGGCCACAGAAGTTCCACGAGGTGACGACGGCCAACCTGGAGCGAATGATGCGGCGTTTCAATGAGCTGCAGTACTGGGTGGCCACCGAGCTGTGCCTCTGCCCCGAGCTGGGCAGGAGAGCCCAACTGCTGCGCAAGTTCATCAAGCTGGCTGCACA
Seq C2 exon
CCTCAAGGAGCAGAAGAATCTGAATTCCTTCTTCGCGGTGATGTTTGGTGTGAGCAACACAGCCGTGAGCCGCCTTGCCAAGACCTGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006348-'18-20,'18-19,19-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.190 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=PU(12.9=57.1)
A:
PF0061714=RasGEF=FE(32.3=100)
C2:
PF0061714=RasGEF=FE(16.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCCACGTTGGCTCCTC
R:
CTCCCAGGTCTTGGCAAGG
Band lengths:
194-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]