RnoEX6033815 @ rn6
Exon Skipping
Gene
ENSRNOG00000059961 | Rapgef3
Description
Rap guanine nucleotide exchange factor 3 [Source:RGD Symbol;Acc:621869]
Coordinates
chr7:139236694-139237433:-
Coord C1 exon
chr7:139237308-139237433
Coord A exon
chr7:139237051-139237232
Coord C2 exon
chr7:139236694-139236784
Length
182 bp
Sequences
Splice sites
3' ss Seq
CTGGTCTTTACCCTGTCCAGGTG
3' ss Score
8.23
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
ACCCCACACCCTGAGCAGCTGGGGCCCACTCTGGGTTCTTCTGAGATGCTGGACCTAGTGAGTGCCAAGGACCTGGCAGGCCAGCTCACAGAGCATGACTGGAACCTCTTCAACAGGATCCACCAG
Seq A exon
GTGGAGCTGATCCACTATGTACTGGGCCCCCAGCACCTGCGGGACGTCACCACTGCAAACCTGGAGCGCTTCATGCGACGCTTCAACGAGCTGCAGTACTGGGTGGCCACCGAACTCTGTCTCTGCCCGGTTCCTGGCCCCCGGGCTCAGCTACTCCGGAAGTTCATCAAGCTGGCAGCCCA
Seq C2 exon
CCTCAAGGAGCAGAAGAATCTCAACTCTTTCTTTGCGGTCATGTTTGGCCTCAGCAACTCGGCCATCAGCCGCCTGGCCCACACCTGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059961-'34-39,'34-37,36-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.190 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=PU(12.9=57.1)
A:
PF0061714=RasGEF=FE(32.3=100)
C2:
PF0061714=RasGEF=FE(16.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCACACCCTGAGCAG
R:
CTGATGGCCGAGTTGCTGAG
Band lengths:
195-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]