GgaEX7011920 @ galGal4
Exon Skipping
Gene
ENSGALG00000006348 | RAPGEF3
Description
Rap guanine nucleotide exchange factor (GEF) 3 [Source:HGNC Symbol;Acc:HGNC:16629]
Coordinates
chrLGE22C19W28_E50C23:437991-438570:+
Coord C1 exon
chrLGE22C19W28_E50C23:437991-438116
Coord A exon
chrLGE22C19W28_E50C23:438223-438404
Coord C2 exon
chrLGE22C19W28_E50C23:438480-438570
Length
182 bp
Sequences
Splice sites
3' ss Seq
CCCATCCTCTCCCACGCCAGGTG
3' ss Score
9.65
5' ss Seq
ACAGTGAGC
5' ss Score
4.69
Exon sequences
Seq C1 exon
ACCCCCCACCCTGAGCAGCTGGGCCCCCACGTTGGCTCCTCGGACACGTTGGATCTCATCAGCTCCAAGGACCTGGCCAGCCACCTCACCGACCACGACTGGAACCTCTTCAAGAGCATCCACCAG
Seq A exon
GTGGAGATGATCCACTACATCATGGGGCCACAGAAGTTCCACGAGGTGACGACGGCCAACCTGGAGCGAATGATGCGGCGTTTCAATGAGCTGCAGTACTGGGTGGCCACCGAGCTGTGCCTCTGCCCCGAGCTGGGCAGGAGAGCCCAACTGCTGCGCAAGTTCATCAAGCTGGCTGCACA
Seq C2 exon
CCTCAAGGAGCAGAAGAATCTGAATTCCTTCTTCGCGGTGATGTTTGGTGTGAGCAACACAGCCGTGAGCCGCCTTGCCAAGACCTGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006348-'32-32,'32-30,33-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.119 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=PU(12.9=57.1)
A:
PF0061714=RasGEF=FE(32.3=100)
C2:
PF0061714=RasGEF=FE(16.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACCCTGAGCAGCTGG
R:
CTCCCAGGTCTTGGCAAGG
Band lengths:
213-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]