BtaEX0029693 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006828 | RAPGEF3
Description
Rap guanine nucleotide exchange factor (GEF) 3 [Source:HGNC Symbol;Acc:HGNC:16629]
Coordinates
chr5:32714229-32715010:+
Coord C1 exon
chr5:32714229-32714354
Coord A exon
chr5:32714475-32714656
Coord C2 exon
chr5:32714920-32715010
Length
182 bp
Sequences
Splice sites
3' ss Seq
CAGTGCTGCCCCCTGCCCAGGTG
3' ss Score
5.34
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
ACCCCACACCCCGATCAGCTGGGGCCCACTGTGGGCTCTGCCGAGGGGCTGGACCTGGTGAGCACCAAGGACCTGGCGGGCCAGCTCACGGACCACGACTGGAGCCTCTTCAACAGCATCCACCAG
Seq A exon
GTGGAGCTGATCCACTATGTGCTGGGCCCCCAGCACCTGCGGGACGTCACCACCGCCAACCTGGAGCGCTTCATGCGCCGCTTCAACGAGCTGCAGTACTGGGTGGCCACGGAGCTGTGTCTCTGCTCTGTGCCCGGCCTACGGGCCCAGCTGCTCAGGAAGTTCATCAAACTGGCAGCCCA
Seq C2 exon
CCTCAAGGAGCAAAAGAATCTTAATTCCTTCTTTGCCATCATGTTTGGTCTCAGCAACTCAGCCATCAGCCGCCTGGCCCATACCTGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006828-'25-26,'25-25,26-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.262 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=PU(12.9=57.1)
A:
PF0061714=RasGEF=FE(32.3=100)
C2:
PF0061714=RasGEF=FE(16.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCACACCCCGATCAG
R:
CAGGTATGGGCCAGGCGG
Band lengths:
213-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development