GgaEX6047840 @ galGal3
Exon Skipping
Gene
ENSGALG00000013587 | COL2A1
Description
NA
Coordinates
chrUn_random:31477668-31478318:-
Coord C1 exon
chrUn_random:31478265-31478318
Coord A exon
chrUn_random:31478098-31478151
Coord C2 exon
chrUn_random:31477668-31477829
Length
54 bp
Sequences
Splice sites
3' ss Seq
CTCTGTGATTCCCTCCCCAGGGA
3' ss Score
10.71
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
GGTCCAACCGGTGTCACTGGTCCCAAAGGAGCTCGTGGGGCTCAGGGTCCCCCT
Seq A exon
GGAGCCACGGGATTCCCCGGAGCTGCCGGCCGTGTGGGACCGCCCGGCCCTAAT
Seq C2 exon
GGTAACCCAGGCCCCCCCGGACCCCCTGGCTCTGCTGGCAAAGACGGCCCCAAGGGTGTTCGTGGCGACGCCGGCCCCCCCGGCCGTGCAGGTGACCCCGGCCTCCAAGGCCCCGCCGGCCCCCCCGGCGAGAAGGGCGAACCCGGCGAGGACGGCCCCGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013587-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0139113=Collagen=PU(33.8=42.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCAAAGGAGCTCGTGGG
R:
CTTGGAGGCCGGGGTCAC
Band lengths:
143-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]