GgaEX6047970 @ galGal3
Exon Skipping
Gene
ENSGALG00000003038 | ATF7
Description
NA
Coordinates
chrUn_random:38348901-38349580:+
Coord C1 exon
chrUn_random:38348901-38349035
Coord A exon
chrUn_random:38349422-38349547
Coord C2 exon
chrUn_random:38349549-38349580
Length
126 bp
Sequences
Splice sites
3' ss Seq
CATCTGTTGACCACCTCTAGGAG
3' ss Score
6.54
5' ss Seq
ATACACCCA
5' ss Score
-40
Exon sequences
Seq C1 exon
AGCACTGCAGCCCTGGACATGTCGCTGCCCTCCACCCCAGACATCAAGATAAAGGAGGAGGAGCCGGTGGAGGTGGACTCGTCCCCCCCAGACAGCCCTGCCTCCAACCCACGGTCACCGCAGACCAAGGAGAAG
Seq A exon
GAGATCACCCCCAAGCCCGTGATCATTTCCACACCAACACCAACCATCGTGCGCCCCGGATCGCTGCCCCTGCACCTGGGCTACGACCCCCTGCACCCCACGCTGCCTTCCCCAACCTCCGTCATA
Seq C2 exon
ACCCAGGCCCCGCCGTCCAACAGGCAGCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003038-'1-3,'1-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.976 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGCAGCCCTGGACATG
R:
CGAGCTGCCTGTTGGACG
Band lengths:
164-290
Functional annotations
There are 2 annotated functions for this event
PMID: 25301550
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: two hybrid. ELM ID: ELMI003062; ELM sequence: RPGSLPL; Overlap: FULL
PMID: 26538579
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: fluorescence polarization spectroscopy, protein array. ELM ID: ELMI003062; ELM sequence: RPGSLPL; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]