GgaEX6050570 @ galGal3
Exon Skipping
Gene
ENSGALG00000015384 | F1NA49_CHICK
Description
NA
Coordinates
chrZ:52500394-52503933:-
Coord C1 exon
chrZ:52503824-52503933
Coord A exon
chrZ:52502745-52503627
Coord C2 exon
chrZ:52500394-52501427
Length
883 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTGTCTGACTCACAGCGC
3' ss Score
9.12
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
GAATGGATGGACCACAAGCTCTCCTGGAATCCAGAGGAATATGGTGGGATCACTGCTATCCGTGTCCCTTCTGAGTCCCTGTGGCTTCCCGACATTGTTCTGTTTGAAAA
Seq A exon
CGCTGATGGACGTTTTGAAGGGTCCCTGATGACCAAAGCCATAGTGAAATACAATGGAGTGGTGACCTGGATGCCACCAGCCAGCTACAAGAGCTCCTGCACGATGGACGTAACCTTCTTCCCCTTCGACAGGCAGAACTGCTCCATGAAATTTGGGTCATGGACATATGATGGCAGTATGGTGGACTTAATTCTAGTGGATGAAAATGTAGACAGGAAAGACTTCTTTGATAACGGGGAGTGGGAGATCTTAAATGCCAAAGGTATGAAAGGCAACAGGAAGGATGGGCTGTACTCTTACCCATTTGTCACTTACTCCTTTGTGTTGAGACGCCTTCCACTGTTCTACACTCTTTTCTTAATAATCCCTTGCCTGGGATTGTCTTTTCTAACTGTCCTGGTGTTTTACCTGCCCTCAGATGAAGGAGAAAAGCTCTCATTGTCCACTTCAGTTCTAGTGTCCCTCACTGTTTTCCTTTTAGTGATCGAGGAAATAATCCCTTCTTCTTCCAAAGTCATCCCCCTGATTGGTGAGTATCTCCTGTTCATCATGATTTTTGTGACCCTCTCTATCATTGTGACTGTCTTTGTTATCAACGTCCACCACCGCTCCTCAGCAACTTACCACCCCATGGCCCCCTGGGTTAAAAGACTCTTCCTCCAGAAGCTGCCTCGGCTGCTCTGCATGAAGGGACACGTAGACCGTTATTCCTTCTCAGACACTGAGGAAAAGGAAACCACCTTGAAATCAAAACTCCCAGGAAAACAGAAACACAAGCAAGCAAAAGATGGAGAGAAAGTCGTGATTGCCTTTCTGGAAAAGGCAGCTGATTCCATTCGGTACATTTCCAGGCATGTTAAAAAGGAGCACTTCATCAGGCAG
Seq C2 exon
GTTGTCCAAGACTGGAAATTTGTAGCTCAAGTCCTGGATCGGATCTTCCTGTGGTTATTCCTGGTGGTGTCAGTGACGGGTTCAGTTCTCATCTTCACCCCTGCATTACAGATGTGGCTGAACAGCACTTTGTAGAAAATACTCCCACGCTAACATACAACAAGCCCAATGACATGGGACGGTGGTGCCTTTGAGACTGGTCTCTGCTCTGCAGGATGGGAAGCAGTGCAAGAGGGAGAGAAGGTGATGTTAACAACAGGCATTGGCTACTACTTCCTTCATGTGGCTCTGACTGTTACAGCCTTGGTGGAGACTGGAGAAGGGCTCGGTGAATGGCTGAATCCAAAAGTGAATTGGGGATGCATAAATGAGTTACAAGTATTTTACTAGTAGTTTGGTTATAATACAGTATAAGCCAGGATTATTAGTTATACTTGGGGATAGCAGTTCTGGCACAACCATTATTTTTCACGAGTAGATGTGTCAGTTAAAATACTACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015384-'3-5,'3-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.022 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(17.6=100)
A:
PF0293118=Neur_chan_LBD=PD(55.1=38.3),PF0293211=Neur_chan_memb=WD(100=51.2),PF0293211=Neur_chan_memb=PU(63.7=19.7)
C2:
PF0293211=Neur_chan_memb=PD(34.1=68.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCCTTCTGAGTCCCTGTG
R:
GGCTGTAACAGTCAGAGCCAC
Band lengths:
351-1234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]