RnoEX6055787 @ rn6
Exon Skipping
Gene
ENSRNOG00000012448 | Chrnb3
Description
cholinergic receptor nicotinic beta 3 subunit [Source:RGD Symbol;Acc:621544]
Coordinates
chr16:68875709-68881400:-
Coord C1 exon
chr16:68881291-68881400
Coord A exon
chr16:68880218-68881100
Coord C2 exon
chr16:68875709-68877641
Length
883 bp
Sequences
Splice sites
3' ss Seq
AGTGACTACTTTCATGGCAGTGC
3' ss Score
3.79
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GAATGGACAGACCAAAAATTACGCTGGAATCCGGAAGAATATGGTGGAATTAATTCGATAAAGGTTCCATCAGAATCGCTCTGGCTGCCGGACATAGTTCTCTTTGAAAA
Seq A exon
TGCTGACGGACGTTTTGAGGGCTCCCTCATGACCAAGGCCATTGTGAAGTCCAGTGGAACCGTCAGCTGGACTCCTCCCGCCAGCTACAAGAGTTCCTGCACCATGGATGTCACATTTTTCCCGTTCGACAGGCAGAACTGCTCGATGAAGTTTGGATCCTGGACTTACGACGGTACCATGGTTGACCTCATTCTAATCAATGAAAACGTTGACCGGAAAGACTTTTTTGATAACGGAGAGTGGGAGATACTCAACGCAAAGGGGATGAAGGGCAACAGAAGAGAAGGCTTTTACTCCTATCCGTTTGTTACCTACTCTTTTGTCCTGAGACGCCTGCCCTTGTTTTACACGCTCTTTTTGATAATCCCCTGCCTGGGGTTGTCTTTTCTCACGGTCCTGGTGTTCTACCTACCCTCGGACGAAGGGGAAAAACTCTCATTATCCACCTCCGTTTTGGTCTCTTTGACGGTGTTTCTTTTAGTGATTGAAGAAATAATCCCGTCCTCTTCGAAGGTCATCCCCCTCATTGGCGAGTACCTCCTCTTCATTATGATTTTTGTCACGCTGTCTATTATCGTCACGGTTTTTGTAATTAATGTCCACCACAGATCTTCCTCAACGTACCATCCCATGGCCCCCTGGGTGAAGAGGCTGTTTCTACAAAGACTCCCGAGATGGCTTTGCATGAAGGACCCCATGGACCGCTTCTCTTTCCCGGATGGAAAGGAGAGTGATACAGCCGTGAGGGGGAAAGTCTCAGGCAAAAGGAAACAGACTCCCGCCAGCGATGGAGAAAGAGTTCTGGTCGCTTTCCTCGAGAAGGCCTCCGAGTCCATCAGATACATTTCGAGGCATGTGAAAAAGGAACACTTCATCAGCCAG
Seq C2 exon
GTAGTGCAAGACTGGAAATTTGTGGCTCAAGTTCTGGACCGCATCTTCCTGTGGCTCTTTCTGATAGCTTCTGTGTTGGGTTCCATTCTGATTTTTATTCCAGCCTTGAAGATGTGGATACATCGTTTCCACTAGGAGCCACTCTCTGGACCCATTTAGAAGACATACATAGAGACAATCCCACCTTAGGACTGACAGCGGCTGGCATGCTGACAGGAAGCAGAGCCATGCAATCGTAGTGGTGCCCTTGTCTTGTCCTGGGAGCTTTCTGTGATTGCAGGGCACTGAGAGAATGTGGGTTTGAGTTAGTGAGATGGTGGCTGCCATTAGAGGTGTAGTTGGGCAATTTGGAGACGTCTCCATGTTATATTGTTATGTGGGAGTTCCTGAACTACTCCCTCTGCTCATCCCTGAACGCACTGGGGCTATGTGGTATTTCTCTAGCAGTGTGCGTGAACGCATTTTGACAATAGTTTCAGGAATTACGCAGGTACAACTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012448-'9-8,'9-5,10-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.027 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(17.6=100)
A:
PF0293118=Neur_chan_LBD=PD(55.1=38.3),PF0293211=Neur_chan_memb=WD(100=42.4),PF0293211=Neur_chan_memb=PU(62.1=18.3)
C2:
PF0293211=Neur_chan_memb=PD(35.6=68.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCCGGACATAGTTCTCTT
R:
GGCAGCCACCATCTCACTAAC
Band lengths:
352-1235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]