GgaEX7003313 @ galGal4
Exon Skipping
Gene
ENSGALG00000016341 | CSMD1
Description
CUB and Sushi multiple domains 1 [Source:HGNC Symbol;Acc:HGNC:14026]
Coordinates
chr3:89400011-89464167:+
Coord C1 exon
chr3:89400011-89400123
Coord A exon
chr3:89421585-89421662
Coord C2 exon
chr3:89464080-89464167
Length
78 bp
Sequences
Splice sites
3' ss Seq
CTCTTTGCTTGTTTTCTCAGTGA
3' ss Score
8.71
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
GCTCACTGGTATGAATCTACCCTCCCCTGTTATCAGCAGTAAGAACTGGTTACGACTTCATTTTACATCTGACAGCAACCACCGGCGAAAGGGATTTAATGCTCAGTTTCAAG
Seq A exon
TGAAAAAAGCAATCGAACTGAAATCAAGAGGAGTCAAGATGTTGCCCAGCAAAGACAGTAATCACAAAAATTCTGTCT
Seq C2 exon
TGACGCAGGGGGGGGATGCAGTTGCATCTGATACATGTCCTGATCCTGGGATTCCTGAAAATGGGAAAAGAGTGGGCTCTGACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016341-'7-14,'7-12,8-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.444 C2=0.717
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(35.3=92.3)
A:
NO
C2:
PF0008415=Sushi=PU(29.3=56.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCCCCTGTTATCAGCAGT
R:
AGCCCACTCTTTTCCCATTTTCA
Band lengths:
172-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]