RnoEX6056046 @ rn6
Exon Skipping
Gene
ENSRNOG00000054984 | AABR07026483.1
Description
NA
Coordinates
chr16:78236947-78340734:+
Coord C1 exon
chr16:78236947-78237305
Coord A exon
chr16:78273336-78273413
Coord C2 exon
chr16:78340647-78340734
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTGTTTTCTTTCAGTGA
3' ss Score
10.85
5' ss Seq
TCTGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
ATCCATCATTGATGAAGACAAGAGATGTCAGATCCTCTCAAACACTTTCACTTCTTCATTTAGGAATAGAAGTGGCCCTGTTTTGCCCAAATCGTCTTTAGATGCTAAGGCAAGTAACAACCAAGCTGTACTTGAACTGTCCCAGGAGACCGTCAGTGATCCAATATTAAAGCAGGCGTGATAGTGCCATGGGACATTTGATCTGTTGGTTTCAAAAGATATTTTTCTCCTTTTCCTCGTCTCCAGGCTCACAGGCATGAACCTCCCATCCCCTGTGATCAGCAGTAAGAACTGGCTCCGTCTCCATTTCACGTCTGACAGCAACCATCGACGTAAGGGCTTCAACGCTCAGTTCCAAG
Seq A exon
TGAAAAAGGCAATTGAGCTGAAGTCCAGAGGAGTCAAAATGCTACCAAGCAAGGACAGCAGCCACAAAAACTCTGTCT
Seq C2 exon
TGACCCAAGGAGGTGTGTCTCTGGTCTCTGACATGTGTCCAGATCCTGGAATTCCAGACAATGGCAGAAGAGCAGGCTCTGACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054984-'0-3,'0-1,1-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCTCCCATCCCCTGTGATC
R:
GAGCCTGCTCTTCTGCCATTG
Band lengths:
179-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]