MmuEX6034662 @ mm10
Exon Skipping
Gene
ENSMUSG00000060924 | Csmd1
Description
CUB and Sushi multiple domains 1 [Source:MGI Symbol;Acc:MGI:2137383]
Coordinates
chr8:16391752-16501392:-
Coord C1 exon
chr8:16501280-16501392
Coord A exon
chr8:16463084-16463161
Coord C2 exon
chr8:16391752-16391839
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTTCTTTCTTTCAGTGA
3' ss Score
11.34
5' ss Seq
TCTGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
GCTCACAGGCATGAACCTCCCATCCCCTGTGATCAGCAGCAAGAACTGGCTCCGTCTCCACTTTACATCTGACAGCAATCACCGACGTAAAGGGTTCAATGCTCAGTTCCAAG
Seq A exon
TGAAAAAGGCAATTGAGCTGAAGTCGAGAGGAGTCAAGATGCTACCAAGCAAGGACAGCAGCCACAAAAACTCTGTCT
Seq C2 exon
TGACCCAAGGAGGCGTGTCTCTCATCTCAGACATGTGTCCAGATCCCGGGATTCCAGACAATGGCAGAAGAGCAGGTTCTGATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060924-'19-30,'19-29,20-30=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.185 C2=0.300
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(35.3=92.3)
A:
NO
C2:
PF0008415=Sushi=PU(29.3=56.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGGCATGAACCTCCCATC
R:
TGTCTGGAATCCCGGGATCTG
Band lengths:
170-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types