HsaEX6079398 @ hg19
Exon Skipping
Gene
ENSG00000183117 | CSMD1
Description
CUB and Sushi multiple domains 1 [Source:HGNC Symbol;Acc:14026]
Coordinates
chr8:3474232-3611566:-
Coord C1 exon
chr8:3611452-3611566
Coord A exon
chr8:3565936-3566013
Coord C2 exon
chr8:3474232-3474319
Length
78 bp
Sequences
Splice sites
3' ss Seq
CTTGGTTTTGTTTCTTCCAGTGA
3' ss Score
8.77
5' ss Seq
TCTGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
AGGCTAACTGGCATGAACCTCCCCTCTCCAGTTATCAGTAGCAAGAATTGGCTACGACTCCATTTCACCTCTGACAGCAACCACCGACGCAAAGGATTTAACGCTCAGTTCCAAG
Seq A exon
TGAAAAAGGCGATTGAGTTGAAGTCAAGAGGAGTCAAGATGCTGCCCAGCAAGGATGGAAGCCATAAAAACTCTGTCT
Seq C2 exon
TGAGCCAAGGAGGTGTTGCATTGGTCTCTGACATGTGTCCAGATCCTGGGATTCCAGAAAATGGTAGAAGAGCAGGTTCCGACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183117-'5-10,'5-7,6-10=AN
Average complexity
A_S
Mappability confidence:
90%=100=83%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.231 C2=0.378
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(35.3=92.3)
A:
NO
C2:
PF0008415=Sushi=PU(28.8=56.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCCCTCTCCAGTTATCAGT
R:
TCGGAACCTGCTCTTCTACCA
Band lengths:
180-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)