GgaEX7004013 @ galGal4
Exon Skipping
Gene
ENSGALG00000014370 | SEL1L3
Description
sel-1 suppressor of lin-12-like 3 (C. elegans) [Source:HGNC Symbol;Acc:HGNC:29108]
Coordinates
chr4:73001161-73004089:+
Coord C1 exon
chr4:73001161-73001282
Coord A exon
chr4:73002988-73003103
Coord C2 exon
chr4:73004034-73004089
Length
116 bp
Sequences
Splice sites
3' ss Seq
CTCCTTTGTTTTTCTGTCAGGTT
3' ss Score
9.75
5' ss Seq
CAGGTACAT
5' ss Score
7.79
Exon sequences
Seq C1 exon
GTTCACTGTTTCAATCTGGCTATATTTACTGCATCACTGTGAAAAGGATCTGTGTGGTATACTCTATTTTATTGATCCAAAAGAGATGTATAGTACTCCTGCTATATTTCTAAATGAGGAAG
Seq A exon
GTTATGTGCATATTCAGATGCACCTCATTAGGGGAGATGACCTTGCAGTGAAAACAAGCTTCAGCCTTCCTCTGAAGCAGTGGTTTCGACTGGATCTCTCTTTTAAGGGTGGACAG
Seq C2 exon
GTAGAAGTGAGCAGCGTTGGGAAGAATTTGAAAAGATATCACCACCAGTCATTTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014370-'4-8,'4-7,5-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCACTGTTTCAATCTGGCTAT
R:
TGACTGGTGGTGATATCTTTTCA
Band lengths:
173-289
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]