RnoEX6042529 @ rn6
Exon Skipping
Gene
ENSRNOG00000004932 | Sel1l3
Description
SEL1L family member 3 [Source:RGD Symbol;Acc:1562860]
Coordinates
chr14:60149994-60154367:+
Coord C1 exon
chr14:60149994-60150115
Coord A exon
chr14:60151136-60151251
Coord C2 exon
chr14:60154309-60154367
Length
116 bp
Sequences
Splice sites
3' ss Seq
CATTTTTTTTTTCATTGTAGGCA
3' ss Score
10.02
5' ss Seq
CAGGTATCT
5' ss Score
7.33
Exon sequences
Seq C1 exon
GGTCACCATTTCACTGTGGCTTTATTTACTCCATTATTGCGAGGCCAGCCTCTGTGGAATTCTGTACTTTGTTGATTCTAATGAGATGTACGGCACGCCTTCTGTTTTTCTTACGGAAGACG
Seq A exon
GCAGTTTGCATATTCAAATGCATCTCATCAAAGGAGAAGACCTGGCTGTAAAAACAAAATTCACCCTCCCTTTGAAGGAGTGGTGCCGACTGGACATCTCTTTCAATGGAGGCCAG
Seq C2 exon
ATAGTGGTCACTGCCAGCATTGGATGGGACTTGAAAAGCTACCATAATCAGACCATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004932-'7-10,'7-8,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCACCATTTCACTGTGGCT
R:
ATGGTCTGATTATGGTAGCTTTTCA
Band lengths:
178-294
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]