HsaEX0057027 @ hg19
Exon Skipping
Gene
ENSG00000091490 | SEL1L3
Description
sel-1 suppressor of lin-12-like 3 (C. elegans) [Source:HGNC Symbol;Acc:29108]
Coordinates
chr4:25831720-25835191:-
Coord C1 exon
chr4:25835070-25835191
Coord A exon
chr4:25834617-25834732
Coord C2 exon
chr4:25831720-25831778
Length
116 bp
Sequences
Splice sites
3' ss Seq
TGCTCGAATTTTCCTTTTAGGCT
3' ss Score
8.89
5' ss Seq
CAGGTATCT
5' ss Score
7.33
Exon sequences
Seq C1 exon
GTTTACTGTTTCATTGTGGCTTTATTTACTCCATTATTGCAAGGCCAACCTCTGTGGGATTCTGTACTTTGTTGACTCTAATGAGATGTACGGCACACCTTCTGTATTTCTTACGGAAGAGG
Seq A exon
GCTATTTGCATATTCAGATGCATCTTGTCAAAGGGGAAGACCTTGCTGTAAAAACTAAATTCATCATACCTTTGAAGGAGTGGTTTCGACTGGATATCTCTTTTAACGGAGGCCAG
Seq C2 exon
ATAGTAGTAACCACTAGCATTGGACAGGATTTGAAAAGCTACCACAATCAGACCATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000091490_MULTIEX2-4/6=3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTACTGTTTCATTGTGGCTTTATT
R:
ATGGTCTGATTGTGGTAGCTTTTCA
Band lengths:
178-294
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)