MmuEX6017698 @ mm9
Exon Skipping
Gene
ENSMUSG00000029189 | Sel1l3
Description
sel-1 suppressor of lin-12-like 3 (C. elegans) [Source:MGI Symbol;Acc:MGI:1916941]
Coordinates
chr5:53572961-53577312:-
Coord C1 exon
chr5:53577191-53577312
Coord A exon
chr5:53576003-53576118
Coord C2 exon
chr5:53572961-53573019
Length
116 bp
Sequences
Splice sites
3' ss Seq
CCTCTCTTTTTTCATTGCAGGCA
3' ss Score
11.32
5' ss Seq
CAGGTATCT
5' ss Score
7.33
Exon sequences
Seq C1 exon
GGTCACCATTTCACTGTGGCTTTATTTACTCCATTATTGCGAGGCCAGCCTCTGTGGAATTCTGTACTTTGTTGATTCTAATGAGATGTACGGCACGCCTTCTGTGTTTCTTACGGAAGACG
Seq A exon
GCAGTTTGCACATTCAAATGCATCTCGTCAAAGGAGAAGACCTGGCTGTAAAAACCAAGTTCACCATCCCATTGAAGGAGTGGTGCCGACTGGATATCTCGTTCAATGGAGGCCAG
Seq C2 exon
ATAGTGGTCACTGCCAGCATTGGATGGGACTTGAAAAGCTACCATAATCAGACCATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029189-'4-6,'4-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCACCATTTCACTGTGGCT
R:
ATGGTCTGATTATGGTAGCTTTTCA
Band lengths:
178-294
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: