HsaEX0057027 @ hg38
Exon Skipping
Gene
ENSG00000091490 | SEL1L3
Description
SEL1L family member 3 [Source:HGNC Symbol;Acc:HGNC:29108]
Coordinates
chr4:25821996-25847864:-
Coord C1 exon
chr4:25847294-25847864
Coord A exon
chr4:25832995-25833110
Coord C2 exon
chr4:25821996-25822128
Length
116 bp
Sequences
Splice sites
3' ss Seq
TGCTCGAATTTTCCTTTTAGGCT
3' ss Score
8.89
5' ss Seq
CAGGTATCT
5' ss Score
7.33
Exon sequences
Seq C1 exon
GGCTTACAAAGACTTTATTTATTTTACTGTCTTTGAAGGAAACGTTCGCAACGTTTCTGAAGTCTCGGTTGAGTATTTATGCTCTCAGCCTTGTGTTGTCAATTTGGAAGCAGTTGTTTCATCTGAGTTCAGAAGTAGCATTCCCGTGTACAAAAAAAGGTGGAAGAATGAGAAACATCTTCACACCAGCAGGACACAAATAGTACATGTGAAATTTCCAAGCATTATGGTTTACAGAGATGATTATTTCATCAGACATTCCATCTCTGTATCTGCAGTGATAGTACGCGCCTGGATTACTCACAAATACAGTGGCAGAGACTGGAATGTTAAATGGGAGGAAAACTTGCTCCATGCTGTAGCAAAGAATTATACCCTCCTGCAGACCATCCCGCCTTTTGAACGCCCTTTCAAAGATCATCAAGTGTGCCTTGAGTGGAACATGGGTTATATTTGGAACCTTCGGGCAAACAGGATTCCACAGTGTCCTCTGGAAAATG
Seq A exon
GCTATTTGCATATTCAGATGCATCTTGTCAAAGGGGAAGACCTTGCTGTAAAAACTAAATTCATCATACCTTTGAAGGAGTGGTTTCGACTGGATATCTCTTTTAACGGAGGCCAG
Seq C2 exon
CTTCCGGGAGGATTTCCATTATAATGACACAGCTGGGTACTTCATTATTGGAGGGAGCAGGTATGTGGCTGGCATTGAAGGGTTTTTTGGACCCCTGAAGTACTATCGCCTTCGCAGTCTGCACCCCGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000091490_MULTIEX2-3/7=C1-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.003 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATACCCTCCTGCAGACCATCC
R:
AGACTGCGAAGGCGATAGTACT
Band lengths:
249-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development