HsaEX0057025 @ hg19
Exon Skipping
Gene
ENSG00000091490 | SEL1L3
Description
sel-1 suppressor of lin-12-like 3 (C. elegans) [Source:HGNC Symbol;Acc:29108]
Coordinates
chr4:25834617-25849486:-
Coord C1 exon
chr4:25848916-25849486
Coord A exon
chr4:25836819-25836945
Coord C2 exon
chr4:25834617-25834732
Length
127 bp
Sequences
Splice sites
3' ss Seq
AGCCATTTTGCTGTTTGCAGATG
3' ss Score
8
5' ss Seq
AGTGTAAGG
5' ss Score
5.2
Exon sequences
Seq C1 exon
GGCTTACAAAGACTTTATTTATTTTACTGTCTTTGAAGGAAACGTTCGCAACGTTTCTGAAGTCTCGGTTGAGTATTTATGCTCTCAGCCTTGTGTTGTCAATTTGGAAGCAGTTGTTTCATCTGAGTTCAGAAGTAGCATTCCCGTGTACAAAAAAAGGTGGAAGAATGAGAAACATCTTCACACCAGCAGGACACAAATAGTACATGTGAAATTTCCAAGCATTATGGTTTACAGAGATGATTATTTCATCAGACATTCCATCTCTGTATCTGCAGTGATAGTACGCGCCTGGATTACTCACAAATACAGTGGCAGAGACTGGAATGTTAAATGGGAGGAAAACTTGCTCCATGCTGTAGCAAAGAATTATACCCTCCTGCAGACCATCCCGCCTTTTGAACGCCCTTTCAAAGATCATCAAGTGTGCCTTGAGTGGAACATGGGTTATATTTGGAACCTTCGGGCAAACAGGATTCCACAGTGTCCTCTGGAAAATG
Seq A exon
ATGTGGTTGCCCTGCTTGGCTTTCCTTATGCCTCCAGTGGAGAAAACACAGGCATTGTCAAGAAGTTCCCGAGGTTTCGGAACCGAGAGCTGGAGGCCACTCGACGCCAGAGGATGGATTACCCAGT
Seq C2 exon
GCTATTTGCATATTCAGATGCATCTTGTCAAAGGGGAAGACCTTGCTGTAAAAACTAAATTCATCATACCTTTGAAGGAGTGGTTTCGACTGGATATCTCTTTTAACGGAGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000091490_MULTIEX2-2/6=1-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.002 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACGCGCCTGGATTACTCAC
R:
GTCTTCCCCTTTGACAAGATGCA
Band lengths:
258-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)