BtaEX6030750 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002299 | SEL1L3
Description
Bos taurus sel-1 suppressor of lin-12-like 3 (C. elegans) (SEL1L3), mRNA. [Source:RefSeq mRNA;Acc:NM_001206556]
Coordinates
chr6:46866289-46881531:-
Coord C1 exon
chr6:46880961-46881531
Coord A exon
chr6:46868308-46868434
Coord C2 exon
chr6:46866289-46866410
Length
127 bp
Sequences
Splice sites
3' ss Seq
AGCTGTCTTGCTGTTTACAGATG
3' ss Score
9
5' ss Seq
AGTGTAAGA
5' ss Score
4.57
Exon sequences
Seq C1 exon
GGCTTACAAAGACTTTATTTATTTCACCATCTTCGAAGGGAATGTTCGCAATGTGTCTGAAGTCTCCGTAGAGTATTTATGCTCTCAGCCTTGTGTTGTCAATTTGGAAGCAGTTGTTTCATCTGAGTTCAGAAGTAGCATTCCCGTGTACAAAAAAAGGTGGAAGAATGAGAAACATCTTCACACCAGCAGAACACAAATCGTACATGTGAAATTCCCGAGCATCATGGTTTACAGAGATGATTATTTCATCAGACACTCCATTTCAGTATCTGTGGTGATACTACGAGCCTGGATCACTCACCAATATAGCAGTGGGGACTTGAATGTTAAATGGGAGGAAAATTTGCTACACGCTGTAGCAAAGAATTACACGCTGTTGAAGACTGTCCCGCCTTTTGAACGCCCTTTCAAAGATCATCAAGTGTGCCTTGAGTGGAACATGGATTATATTTGGAACCTTCGAGCAAACAAGATTCCCCAGTGTCCTCTTGAGAATG
Seq A exon
ATGTGGTTACCCTCCTGGAATTTCTCTATGCCTCCAGTGGAGAAAACACAGGCATTGTGAAGAAGTTCCTGAGATTTCAGAATCGAGAGCTGGAGGCCACTCGACGCCAGCGGATAGATTACCCAGT
Seq C2 exon
GTTTACTGTTTCACTGTGGCTTTATTTACTCCATTATTGCAAGGCCAATCTCTGTGGGATTCTGTACTTTGTTGATTCTAATGAGATGTACGGCACACCTTCTATATTTCTTACTGAAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002299-'1-4,'1-2,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGTGGGGACTTGAATGTT
R:
CCACAGAGATTGGCCTTGCAA
Band lengths:
247-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]