DreEX0070295 @ danRer10
Exon Skipping
Gene
ENSDARG00000097212 | si:dkey-24p1.6
Description
si:dkey-24p1.6 [Source:ZFIN;Acc:ZDB-GENE-060503-67]
Coordinates
chr15:38398105-38401178:+
Coord C1 exon
chr15:38398105-38398597
Coord A exon
chr15:38400817-38400943
Coord C2 exon
chr15:38401057-38401178
Length
127 bp
Sequences
Splice sites
3' ss Seq
AGCCTTCTTTTCCTCTTCAGAGG
3' ss Score
8.89
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
ATGTTTTTAACTGGCTGTTTGAGTCGCTCCAGCTCAGGTAACGTGGCTTTTCTCGACGCACCAGATTCGCCAGTCTCCAAGTGTCCTTTACGCGTTCAGTTCAGCTGTTTTCAGCCGTCAGTGGTGCACGTTCAGGTTCTGGTCACTTTTGATACTGGATCCACCTCAGTTGTTTTTCACAAACACTGGAACTGCGAGCCGGGACGACCCAGAACCCGAGTGGTATTCGTGGGGTTTCCTGACTGGATTGTGTACCGTCCTGACCGGGTAATCCGCGGTTCTGATTGGGCGCTCAGCTGTTTGTTGCGCGGTTGGATCGGCCCAGATGAAACCTCCGGGCCGGACAGGTTTTTTGGAGCCAGTGTGTCGATTCCTCTCAACATTCAGTCACCACTGAGTCGACCCTTAAAACAACACCAGCTTTGTGCCAACTGGGACACAGATCTGCTCTGGAGATTCAGGAGGGACACGCCACAGTGCGCCCAAGAAAATG
Seq A exon
AGGCGGCTTCTCTTCTGTCCACATTGTATGCCTCTACCGGTGAGCGTTATGGCATCATCAAAACCCTCCAGCCATTCAGCAATCCAGTTCTGGAAGGGCAGAGACTCAAATCCATCCATTATCCCTG
Seq C2 exon
GTGTGCAGTTTCACTTTGGCTTTTGCTGGTGAAGCCGTGCAGTAACCGGTTTTGTGGACTTCTGCACCACATCGACGCTGAGAACAACTACGCCTCTCCTACAGTGTTCCTGACTGAGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000097212-'1-3,'1-1,2-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCAGTGTGTCGATTCCTCT
R:
AGGAACACTGTAGGAGAGGCG
Band lengths:
248-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]