RnoEX6042530 @ rn6
Exon Skipping
Gene
ENSRNOG00000004932 | Sel1l3
Description
SEL1L family member 3 [Source:RGD Symbol;Acc:1562860]
Coordinates
chr14:60135743-60150115:+
Coord C1 exon
chr14:60135743-60136313
Coord A exon
chr14:60147907-60148033
Coord C2 exon
chr14:60149994-60150115
Length
127 bp
Sequences
Splice sites
3' ss Seq
GGCTTCTGTGATGTTTGCAGATG
3' ss Score
8.63
5' ss Seq
CATGTAAGA
5' ss Score
5.58
Exon sequences
Seq C1 exon
AACGTACACAGACTTTATTTATTTTACTGCCTTTGAAGGGAGCGTGCGCAATGTCTCTGAAGTCTCTGTGGAGTATTTATGCTCCCAGCCTTGTGTTGTCAATTTGGAAGCGGTTGTGTCATCCGAGTTCAGAAGTAGCATTCCCGTGTACAAAAAGAGGTGGAGGAATGAGAAGCATCTTCACACCAGCAGGACACAGATAGTACACGTGAAGTTTCCGAGCATTATGGTGTACAGGGATGACTACCTGATCAGACACCCCATCTCGGTGTCCCCAGTGATTCTCCGAGCCTGGATCACTCACTGGCACAGTGGCGGGGGCTTGAACGTGCGAGGGGAGGAGAATTTGCTGCACGCAGTAGCCAAGAATTACACCCTGCTGCAGACGGTCCCGCCTTTCGAACGGCCTTTCAAAGATCATCAGGTGTGCCTGGAGTGGAACATGGACTATCTCTGGAGTCTCTGGGCCAATAGGATCCCACAGTGTCCTCTGGAAAGTG
Seq A exon
ATGCAGTTCCCCTCCTCAGCTTTCCCTATGCTTCCAGTGGAGAAAACACAGGCATCGTAAAGAAGCTCCCAAAGTTCCAGAACCGAGAACTAGAGGCCACCCGAAGCCAGCGCGTGGACTACCCCAT
Seq C2 exon
GGTCACCATTTCACTGTGGCTTTATTTACTCCATTATTGCGAGGCCAGCCTCTGTGGAATTCTGTACTTTGTTGATTCTAATGAGATGTACGGCACGCCTTCTGTTTTTCTTACGGAAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004932-'3-7,'3-4,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTACACCCTGCTGCAGACG
R:
AAAAACAGAAGGCGTGCCGTA
Band lengths:
242-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]