GgaEX1051585 @ galGal4
Exon Skipping
Gene
ENSGALG00000014370 | SEL1L3
Description
sel-1 suppressor of lin-12-like 3 (C. elegans) [Source:HGNC Symbol;Acc:HGNC:29108]
Coordinates
chr4:72995781-73001282:+
Coord C1 exon
chr4:72995781-72996369
Coord A exon
chr4:72998219-72998345
Coord C2 exon
chr4:73001161-73001282
Length
127 bp
Sequences
Splice sites
3' ss Seq
GGAAATCTGTATTTTTGCAGATG
3' ss Score
6.4
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GATGGATTATGTGGACTTCATTCATTTAAATGTTTTGGAAAAGAAAGTCCTTAACAGTTCTGAGGTTTCTGTTCAGTATTTATGCTCTAAGCCTTGTATAATTAATTTGGAAGCAGTAGCTTCCTCAGAGTTCAGGACTGGTGTACCAGTATACAGAAGGAGGTGGAAGGATGAGAAGAATATTTATGTTCGTCAGACTCGACAAATACATTTGAGATTTCCAAGCATCATGGTTTACAGAGATGATTACATCATCAGAAACTCAATAATAGTGCACAGTGTGATATTATATGCATGGATTAGTCACCAATCAGTTAGCAGCTATGATGCTGAGCAGAATGGAAGCTACCAGGAGGCAGTTGCCAAGAATTACACTTTTTTAGAAGCAGTTCCACCTTTTGAACGCCCGTATAAAGACCACAAAGTCTGTCTTCAGTGGGGTGCTGACTATTTGTGGATGCTTCAGGCAAACAAGATACCTCAGTGCCCTCATGAAAGCG
Seq A exon
ATGGCGTTCAGATTCTCAACTTCATATATGCTTCCAGTGGGGAGAAGACAGGAATTGTGAAGAGATTTGAACAATTTGAAAACAGAGAACTTGAAACAGTCAGACAACATCAGATTGATTATCCAAT
Seq C2 exon
GTTCACTGTTTCAATCTGGCTATATTTACTGCATCACTGTGAAAAGGATCTGTGTGGTATACTCTATTTTATTGATCCAAAAGAGATGTATAGTACTCCTGCTATATTTCTAAATGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014370-'0-6,'0-4,2-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCACCAATCAGTTAGCAGCT
R:
ACCACACAGATCCTTTTCACAGT
Band lengths:
257-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]