MmuEX6017696 @ mm10
Exon Skipping
Gene
ENSMUSG00000029189 | Sel1l3
Description
sel-1 suppressor of lin-12-like 3 (C. elegans) [Source:MGI Symbol;Acc:MGI:1916941]
Coordinates
chr5:53155553-53200471:-
Coord C1 exon
chr5:53199901-53200471
Coord A exon
chr5:53187956-53188082
Coord C2 exon
chr5:53155553-53155764
Length
127 bp
Sequences
Splice sites
3' ss Seq
GACTTCTATGATGTTTGCAGATG
3' ss Score
7.07
5' ss Seq
CATGTAAGG
5' ss Score
6.57
Exon sequences
Seq C1 exon
AACGTATGCAGACTTTATTTATTTTACTGCCTTTGAAGGGAGCGTGCGCAATGTCTCTGAAGTCTCCGTGGAGTATTTATGCTCTCAGCCTTGTGTTGTCCATTTGGAGGCGGTTGTCTCCTCCGAGTTCAGAAGCAGCATCCCCGTGTACAAGAAGAGGTGGAGGAATGAGAAGCATCTTCACACCAGCAGGACGCAGACAGTGCACGTGAAGTTCCCGAGCATCATGGTGTACAGGGATGACTATTTGATCAGACACCCCATCTCGGTGTCCACGGTGATTCTCCGAGCCTGGATTACTCACTGGCACAGCGGCGGGGGCTTGAACGTCCGAGGGGAGGAGAATTTGCTGCACGCAGTAGCGAAGAATTACACCCTGCTGCAGACGGTCCCGCCTTTTGAACGGCCTTTCAAAGATCATCAGGTGTGCCTGGAGTGGAACATGGACTATCTCTGGAGCCTCTGGGCCAATAGGATCCCACAGTGTCCTCTGGAAAGTG
Seq A exon
ATGCAGTTGCCCTCCTCAGCTTCCCCTATGCTTCCAGCGGAGAAAACACAGGCATCGTGAAGAAGCTCCAAAATTTCCAGAACAGAGAGCTAGAGGCCACTCGAAGCCAGCGCGTGGACTACCCCAT
Seq C2 exon
TGCCATGGAACCAAAATGACTCCGTATTAGAAATCGGTGCAAGGATATTTGAGAAGGCTGTAAAGAGACTCTCTGGCGTTGATGGCCTTCACCAAATTAGCTCTGCCATCCCCTTTCTGATGGATTCCAGCTGCTGTGGATACCATAAAGCATCCTACTACCTCACCGTCTTCTATGAAACTGGATTAAATGGACCTCGGGATCAGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029189_MULTIEX1-1/8=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGGGCCAATAGGATCCCA
R:
AGCTGATCCCGAGGTCCATTT
Band lengths:
248-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types