GgaEX1051585 @ galGal3
Exon Skipping
Gene
ENSGALG00000014370 | SEL1L3
Description
NA
Coordinates
chr4:75829983-75835965:+
Coord C1 exon
chr4:75829983-75830403
Coord A exon
chr4:75832253-75832379
Coord C2 exon
chr4:75835844-75835965
Length
127 bp
Sequences
Splice sites
3' ss Seq
GGAAATCTGTATTTTTGCAGATG
3' ss Score
6.4
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
TTATGCTCTAAGCCTTGTATAATTAATTTGGAAGCAGTAGCTTCCTCAGAGTTCAGGACTGGTGTACCAGTATACAGAAGGAGGTGGAAGGATGAGAAGAATATTTATGTTCGTCAGACTCGACAAATACATTTGAGATTTCCAAGCATCATGGTTTACAGAGATGATTACATCATCAGAAACTCAATAATAGTGCACAGTGTGATATTATATGCATGGATTAGTCACCAATCAGTTAGCAGCTATGATGCTGAGCAGAATGGAAGCTACCAGGAGGCAGTTGCCAAGAATTACACTTTTTTAGAAGCAGTTCCACCTTTTGAACGCCCGTATAAAGACCACAAAGTCTGTCTTCAGTGGGGTGCTGACTATTTGTGGATGCTTCAGGCAAACAAGATACCTCAGTGCCCTCATGAAAGCG
Seq A exon
ATGGCGTTCAGATTCTCAACTTCATATATGCTTCCAGTGGGGAGAAGACAGGAATTGTGAAGAGATTTGAACAATTTGAAAACAGAGAACTTGAAACAGTCAGACAACATCAGATTGATTATCCAAT
Seq C2 exon
GTTCACTGTTTCAATCTGGCTATATTTACTGCATCACTGTGAAAAGGATCTGTGTGGTATACTCTATTTTATTGATCCAAAAGAGATGTATAGTACTCCTGCTATATTTCTAAATGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014370-'0-5,'0-3,1-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCACCAATCAGTTAGCAGCT
R:
ACCACACAGATCCTTTTCACAGT
Band lengths:
257-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]