GgaEX7006039 @ galGal4
Exon Skipping
Gene
ENSGALG00000011120 | SLC4A10
Description
solute carrier family 4, sodium bicarbonate transporter, member 10 [Source:HGNC Symbol;Acc:HGNC:13811]
Coordinates
chr7:20721969-20743448:-
Coord C1 exon
chr7:20743288-20743448
Coord A exon
chr7:20733113-20733301
Coord C2 exon
chr7:20721969-20722060
Length
189 bp
Sequences
Splice sites
3' ss Seq
TACATACTTGTTTTTTTCAGATA
3' ss Score
9.57
5' ss Seq
ATGGTAATG
5' ss Score
5.46
Exon sequences
Seq C1 exon
GTGGTTGAAGTTTGAAGAAGATGTAGAAGATGGTGGGGAGAGGTGGAGCAAACCATATGTTGCCACACTGTCACTTCATAGCTTGTTTGAGCTGAGAAGCTGTATCCTGAATGGCACAGTTTTGTTGGACATGAGAGCTAACTCCATAGAAGAAATTGCAG
Seq A exon
ATATGATTCTGGACCAGCAGGTGGGCTCTGGGCAGCTCAGTGAGGATGTTCGTCATAGAGTACATGAGGCATTACTGAAACAGCATCACCATCAGAACCAGAAGAAACTGAGCAATAGGATCCCGATTGTGAGATCCTTTGCTGATATTGGAAAGAAGCAATCTGAGCCACATTCCATGGATAAAAATG
Seq C2 exon
CAGGTCAGATTGTTTCCCCACAATCTGCTCCAGCCTGTGCTGAGAACAAAAATGATGTGAGCAGAGAAAATAGCACGGTTGACTTTAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011120-'6-9,'6-8,7-9=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.312 C2=0.677
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=PU(18.1=85.5)
A:
PF075658=Band_3_cyto=FE(24.2=100)
C2:
PF075658=Band_3_cyto=FE(11.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAAGAAGATGTAGAAGATGGTGGG
R:
CTTGCTAAAGTCAACCGTGCT
Band lengths:
242-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]