HsaEX0059782 @ hg19
Exon Skipping
Gene
ENSG00000144290 | SLC4A10
Description
solute carrier family 4, sodium bicarbonate transporter, member 10 [Source:HGNC Symbol;Acc:13811]
Coordinates
chr2:162711480-162728894:+
Coord C1 exon
chr2:162711480-162711640
Coord A exon
chr2:162719384-162719572
Coord C2 exon
chr2:162728803-162728894
Length
189 bp
Sequences
Splice sites
3' ss Seq
TTCCGGCCTTTTCTCTTCAGATA
3' ss Score
11.17
5' ss Seq
ATGGTAAAT
5' ss Score
6.41
Exon sequences
Seq C1 exon
GTGGTTGAAGTTTGAAGAAGATGTGGAAGATGGAGGAGAAAGGTGGAGCAAGCCTTATGTGGCTACTCTTTCATTGCACAGCTTGTTTGAATTGAGAAGTTGTATTCTGAATGGAACTGTGTTGCTGGACATGCATGCCAACACTTTAGAAGAAATTGCAG
Seq A exon
ATATGGTTCTTGACCAACAAGTGAGCTCAGGTCAGCTGAATGAAGATGTACGCCATAGGGTCCATGAGGCATTGATGAAACAGCATCATCATCAGAATCAGAAAAAACTCACCAACAGGATTCCCATTGTTCGTTCCTTTGCTGATATTGGCAAGAAACAGTCAGAACCAAATTCCATGGACAAAAATG
Seq C2 exon
CAGGTCAGGTTGTTTCTCCTCAGTCTGCTCCAGCCTGTGTTGAAAATAAAAATGATGTTAGCAGAGAAAACAGCACTGTTGACTTTAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144290-'12-18,'12-17,13-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.009 A=0.648 C2=0.791
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=PU(18.1=85.5)
A:
PF075658=Band_3_cyto=FE(24.2=100)
C2:
PF075658=Band_3_cyto=FE(11.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAAGAAGATGTGGAAGATGGAGG
R:
CTTGCTAAAGTCAACAGTGCTG
Band lengths:
242-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)