DreEX6038701 @ danRer10
Exon Skipping
Gene
ENSDARG00000060303 | slc4a10b
Description
solute carrier family 4, sodium bicarbonate transporter, member 10b [Source:ZFIN;Acc:ZDB-GENE-081105-62]
Coordinates
chr9:51813946-51835869:-
Coord C1 exon
chr9:51835709-51835869
Coord A exon
chr9:51823793-51823981
Coord C2 exon
chr9:51813946-51814034
Length
189 bp
Sequences
Splice sites
3' ss Seq
TGTGTATTGGATGTTTTTAGATA
3' ss Score
6.69
5' ss Seq
ACGGTACTC
5' ss Score
4.58
Exon sequences
Seq C1 exon
GTGGCTGAAGTTTGAAGAGGATGTGGAGGATGGAGGCGAGCGCTGGAGTAAACCGTATGTAGCCACTCTCTCTCTGCACAGTCTGTTTGAGCTGCGGAGCTGCATCATCAACGGCACCGTCATGCTGGACATGAGAGCTGGATCACTGGAGGAGATCGCAG
Seq A exon
ATATGATACTGGACCAACAGGAAGTGGCTGGTCATCTTGAAGACGATGTCAGGAAGAAGGTGAAGGAGGCTCTTCTAAAGCAGCACCATCATCAGAACCAGAAGAAACTGGCCAATCGGATCCCCATCGTCCGCTCTTTCGCTGACATCGGCAAGAAGCAGTCAGAGTCCAACTGCTTGGACAAAAACG
Seq C2 exon
GTCAGACGATTTCACCTCAGACTCAGCCAATGAACATTGAAGTCAAGCACGACGTGAGTCGGGAAAACAGTACTGTGGATTTCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060303-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.156 C2=0.533
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=PU(18.1=85.5)
A:
PF075658=Band_3_cyto=FE(24.3=100)
C2:
PF075658=Band_3_cyto=FE(11.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCTGAAGTTTGAAGAGGA
R:
AATCCACAGTACTGTTTTCCCGAC
Band lengths:
242-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]