BtaEX6009514 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015317 | SLC4A10
Description
sodium-driven chloride bicarbonate exchanger [Source:RefSeq peptide;Acc:NP_001033217]
Coordinates
chr2:34706469-34727556:-
Coord C1 exon
chr2:34727396-34727556
Coord A exon
chr2:34715808-34715996
Coord C2 exon
chr2:34706469-34706560
Length
189 bp
Sequences
Splice sites
3' ss Seq
TTTCTGCCTTCACTCTACAGATA
3' ss Score
11.51
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GTGGTTGAAGTTTGAAGAAGATGTGGAAGATGGAGGGGAAAGGTGGAGCAAGCCTTATGTGGCTACTCTTTCACTGCACAGCTTATTTGAGTTAAGAAGTTGTATTCTGAATGGAACTGTGTTGCTGGACATGCATGCCAATACTTTAGAAGAAATTGCAG
Seq A exon
ATATGGTCCTTGACCAACAAGTGAGCTCAGGTCAGCTCAATGAGGATGTACGCCACAGGGTCCACGAGGCTCTGATGAAACAGCATCACCACCAGAATCAGAAGAAGCTCACCAATAGGATTCCCATTGTTCGTTCCTTTGCTGATATTGGCAAGAAACAATCAGAACCAAATTCCATGGATAAAAATG
Seq C2 exon
CAGGCCAGGTTGTTTCTCCTCAGTCTGCACCAGCCTGTGTTGAAAATAAAAATGATGTGAGCAGGGAAAACAGCACAGTTGATTTCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015317-'5-7,'5-6,6-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.766 C2=0.968
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=PU(16.2=85.5)
A:
PF075658=Band_3_cyto=FE(21.7=100)
C2:
PF075658=Band_3_cyto=FE(10.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTTGAAGTTTGAAGAAGATGTGG
R:
CAACTGTGCTGTTTTCCCTGC
Band lengths:
242-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]