RnoEX6017045 @ rn6
Exon Skipping
Gene
ENSRNOG00000005307 | Slc4a10
Description
solute carrier family 4 member 10 [Source:RGD Symbol;Acc:631407]
Coordinates
chr3:48178124-48198991:+
Coord C1 exon
chr3:48178124-48178284
Coord A exon
chr3:48190361-48190549
Coord C2 exon
chr3:48198900-48198991
Length
189 bp
Sequences
Splice sites
3' ss Seq
TCATCATCTCCCTGTTTCAGATA
3' ss Score
11.21
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GTGGTTAAAATTTGAAGAAGATGTGGAAGATGGAGGAGAAAGATGGAGTAAACCCTACGTGGCTACACTTTCGTTGCACAGCTTGTTTGAGTTGAGAAGCTGCATTCTGAACGGAACTGTGCTACTGGACATGCATGCCAACACTTTAGAGGAGATCGCAG
Seq A exon
ATATGGTCCTTGACCAGCAGGTCAGCTCAGGCCAGCTGAATGAGGATGTACGCCACAGGGTCCATGAAGCCCTGATGAAGCAGCATCATCACCAGAGTCAGAAAAAGCTCACTAACAGGATTCCTATCGTCCGATCTTTTGCTGATATTGGCAAGAAACAATCAGAGCCAAATTCCATGGATAAAAATG
Seq C2 exon
CAGGTCAGGTCGTTTCTCCTCAGTCTGCTCCAGCCTGTGCTGAAAATAAAAATGACGTCAGCAGGGAAAACAGCACCGTAGACTTCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005307-'11-19,'11-15,13-19=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=0.756 C2=0.948
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=PU(16.3=85.5)
A:
PF075658=Band_3_cyto=FE(21.8=100)
C2:
PF075658=Band_3_cyto=FE(11.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAAGAAGATGTGGAAGATGGAGG
R:
CTTGCTGAAGTCTACGGTGCT
Band lengths:
242-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]