GgaEX7009819 @ galGal4
Exon Skipping
Gene
ENSGALG00000002982 | SLC2A6
Description
solute carrier family 2 (facilitated glucose transporter), member 6 [Source:HGNC Symbol;Acc:HGNC:11011]
Coordinates
chr17:6938225-6939050:-
Coord C1 exon
chr17:6938951-6939050
Coord A exon
chr17:6938513-6938724
Coord C2 exon
chr17:6938225-6938377
Length
212 bp
Sequences
Splice sites
3' ss Seq
AACCAACCCGGCTCCTGCAGGGC
3' ss Score
5.17
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GTCTACATCTCTGAGATCTCCCACCCTGGGGTGCGAGGCATGCTGGGCACGTGTCCTCAGATCATGGCAGTGCTGGGCTCCCTCATCCTCTACGTGCTGG
Seq A exon
GGCTGCTCCTGGACTGGCGCTGGCTGGCCGTGGCAGGGGAGGTGCCCGTGCTCACCATGATCCTCCTGCTCTGCTTCATGCCCAACTCGCCCCGCTTCCTGCTCTCCCAGGGGAAGGAGGACGAGGCCCTGCGCTCCCTGTGCTGGCTGCGAGGCAAGGACACAGACTATGCCCAGGAGTACGAGCAGATTAAGGACAGCGTGAGGAAGCAG
Seq C2 exon
AGCCAGCGGATTTCCTGTGCTGAGATCAAGGATCCCTTCATCTACAAGCCCATCCTGATTGCTGTGGGGATGAGGTTCCTGCAGCAGCTCTCTGGTGTCACCTGTGTCCTCGTGTACCTGCAGCCGATATTCAAGAAGACGGCCGTCATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002982-'4-7,'4-4,5-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=FE(7.3=100)
A:
PF0008319=Sugar_tr=FE(15.4=100)
C2:
PF0008319=Sugar_tr=FE(11.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTACATCTCTGAGATCTCCCACC
R:
CAGGATGACGGCCGTCTTCTT
Band lengths:
252-464
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]