HsaEX6063756 @ hg38
Exon Skipping
Gene
ENSG00000160326 | SLC2A6
Description
solute carrier family 2 member 6 [Source:HGNC Symbol;Acc:HGNC:11011]
Coordinates
chr9:133474961-133476336:-
Coord C1 exon
chr9:133476237-133476336
Coord A exon
chr9:133475400-133475611
Coord C2 exon
chr9:133474961-133475113
Length
212 bp
Sequences
Splice sites
3' ss Seq
CACCCACCCCTCGCCCCCAGGCC
3' ss Score
9.92
5' ss Seq
CAGGTGCAG
5' ss Score
4.95
Exon sequences
Seq C1 exon
GTGTACGTGTCTGAGATTGCTCCCCCAGGCGTTCGTGGGGCTCTGGGGGCCACACCCCAGCTCATGGCAGTGTTCGGATCCCTGTCCCTCTACGCCCTTG
Seq A exon
GCCTCCTGCTGCCGTGGCGCTGGCTGGCTGTGGCCGGGGAGGCGCCTGTGCTCATCATGATCCTGCTGCTCAGCTTCATGCCCAACTCGCCGCGCTTCCTGCTCTCTCGGGGCAGGGACGAAGAGGCCCTGCGGGCGCTGGCCTGGCTGCGTGGGACGGACGTCGATGTCCACTGGGAGTTCGAGCAGATCCAGGACAACGTCCGGAGACAG
Seq C2 exon
AGCAGCCGAGTATCGTGGGCTGAGGCACGGGCCCCACACGTGTGCCGGCCCATCACCGTGGCCTTGCTGATGCGCCTCCTGCAGCAGCTGACGGGCATCACGCCCATCCTGGTCTACCTGCAGTCCATCTTCGACAGCACCGCTGTCCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160326-'6-10,'6-7,9-10=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.031 C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=FE(10.8=100)
A:
PF0008319=Sugar_tr=FE(22.9=100)
C2:
PF0008319=Sugar_tr=FE(16.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTACGTGTCTGAGATTGCTCC
R:
AGCGGTGCTGTCGAAGATG
Band lengths:
244-456
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains