HsaEX6063756 @ hg19
Exon Skipping
Gene
ENSG00000160326 | SLC2A6
Description
solute carrier family 2 (facilitated glucose transporter), member 6 [Source:HGNC Symbol;Acc:11011]
Coordinates
chr9:136340083-136341458:-
Coord C1 exon
chr9:136341359-136341458
Coord A exon
chr9:136340522-136340733
Coord C2 exon
chr9:136340083-136340235
Length
212 bp
Sequences
Splice sites
3' ss Seq
CACCCACCCCTCGCCCCCAGGCC
3' ss Score
9.92
5' ss Seq
CAGGTGCAG
5' ss Score
4.95
Exon sequences
Seq C1 exon
GTGTACGTGTCTGAGATTGCTCCCCCAGGCGTTCGTGGGGCTCTGGGGGCCACACCCCAGCTCATGGCAGTGTTCGGATCCCTGTCCCTCTACGCCCTTG
Seq A exon
GCCTCCTGCTGCCGTGGCGCTGGCTGGCTGTGGCCGGGGAGGCGCCTGTGCTCATCATGATCCTGCTGCTCAGCTTCATGCCCAACTCGCCGCGCTTCCTGCTCTCTCGGGGCAGGGACGAAGAGGCCCTGCGGGCGCTGGCCTGGCTGCGTGGGACGGACGTCGATGTCCACTGGGAGTTCGAGCAGATCCAGGACAACGTCCGGAGACAG
Seq C2 exon
AGCAGCCGAGTATCGTGGGCTGAGGCACGGGCCCCACACGTGTGCCGGCCCATCACCGTGGCCTTGCTGATGCGCCTCCTGCAGCAGCTGACGGGCATCACGCCCATCCTGGTCTACCTGCAGTCCATCTTCGACAGCACCGCTGTCCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160326-'3-7,'3-4,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.031 C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=FE(10.8=100)
A:
PF0008319=Sugar_tr=FE(15.3=100)
C2:
PF0008319=Sugar_tr=FE(10.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTACGTGTCTGAGATTGCTCC
R:
AGCGGTGCTGTCGAAGATG
Band lengths:
244-456
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)