BtaEX6047332 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001824 | SLC2A6
Description
solute carrier family 2 (facilitated glucose transporter), member 6 [Source:HGNC Symbol;Acc:HGNC:11011]
Coordinates
chr11:104420643-104422130:-
Coord C1 exon
chr11:104422031-104422130
Coord A exon
chr11:104421198-104421409
Coord C2 exon
chr11:104420643-104420795
Length
212 bp
Sequences
Splice sites
3' ss Seq
CTCACAGCTCCTGTCCGCAGGCC
3' ss Score
9.06
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GTGTACGTGTCTGAGATTGCCCCGCCCAGCGTTCGCGGGGCCCTGGGTGCCACACCCCAGCTCATGGCGGTGTTCGGGTCACTATCCCTCTATGCCCTTG
Seq A exon
GCCTGCTGCTGCCCTGGCGCTGGCTGGCCGTGGCCGGGGAGGGGCCGGTGCTCGTCATGGTCCTGCTGCTCAGCTGCATGCCCAACTCCCCTCGCTTCCTGCTCTCCAAGGGCAGGGACGCGGAGGCGCTGCAGGCACTGGCCTGGCTGCGAGGGCCCGATGCCGACACCCGCTGGGAGTTCGAGCAGATCCAGGACACCGTCCGGAGACAG
Seq C2 exon
AGCAGCCACCTGTCGTGGGCCGAGGCCCGGGACCCGCACATGTACCGCCCGATTGTCATCGCCCTGCTGATGCGCTTCCTGCAGCAGCTGACAGGCATCACGCCCATCCTCGTGTACCTGCAGTCCATCTTTGACAGCACCGCGGTCCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001824-'3-6,'3-3,4-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=FE(7.2=100)
A:
PF0008319=Sugar_tr=FE(15.3=100)
C2:
PF0008319=Sugar_tr=FE(10.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTACGTGTCTGAGATTGCCC
R:
CCGCGGTGCTGTCAAAGAT
Band lengths:
244-456
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]