RnoEX6016064 @ rn6
Exon Skipping
Gene
ENSRNOG00000005900 | Slc2a6
Description
solute carrier family 2 member 6 [Source:RGD Symbol;Acc:1309317]
Coordinates
chr3:5571158-5572521:-
Coord C1 exon
chr3:5572418-5572521
Coord A exon
chr3:5571574-5571782
Coord C2 exon
chr3:5571158-5571310
Length
209 bp
Sequences
Splice sites
3' ss Seq
ACCGAAGCCTCTCTCACCAGGTC
3' ss Score
6.49
5' ss Seq
CAGGTGAAG
5' ss Score
6.66
Exon sequences
Seq C1 exon
GTGTACGTGTCTGAGATTGCACCCCCGGGTGTTCGCGGGGCCCTGGGGGCCACGCCGCAGCTCATGGCCGTGTTTGGATCCCTGTCTCTCTATGCCCTTGGCAA
Seq A exon
GTCTTCTGCTGCCTTGGCGATGGCTTGCCGTGGCCGGGGAGGGGCCTGTTCTGGTCATGATCCTGCTGCTTAGCTTCATGCCCAACTCGCCTCGCTTCCTACTGTCTAAGAGCCGGGATGAGGAAGCACTGCAGGCGCTGATCTGGCTGCGAGCGGACTCTGAGGTCCACTGGGAGTTTGAGCAGATCCAGGACAACGTGCGGAGACAG
Seq C2 exon
AGTAGCCGAGTGTCGTGGGCGGAGGCCTGGGAGCCCCGTGTGTACCGGCCTATTCTCATTACAGTGCTGATGCGTTTTCTGCAGCAGCTGACAGGCATCACTCCCATCCTCGTGTACCTACAGACCATCTTCGACAGCACGTCCGTGGTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005900-'6-4,'6-3,9-4=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008319=Sugar_tr=PU(21.6=94.3)
C2:
PF0008319=Sugar_tr=FE(16.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACGTGTCTGAGATTGCACCC
R:
GACGTGCTGTCGAAGATGGTC
Band lengths:
244-453
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]