MmuEX6099820 @ mm10
Exon Skipping
Gene
ENSMUSG00000036067 | Slc2a6
Description
solute carrier family 2 (facilitated glucose transporter), member 6 [Source:MGI Symbol;Acc:MGI:2443286]
Coordinates
chr2:27024183-27025322:-
Coord C1 exon
chr2:27025223-27025322
Coord A exon
chr2:27024585-27024793
Coord C2 exon
chr2:27024183-27024335
Length
209 bp
Sequences
Splice sites
3' ss Seq
ACTGAAGCCTCTCTCACCAGGTC
3' ss Score
6.3
5' ss Seq
CAGGTGCAG
5' ss Score
4.95
Exon sequences
Seq C1 exon
GTGTACGTGTCTGAGATTGCACCCCCTGATGTTCGTGGGGCCCTGGGGGCCACACCGCAGCTCATGGCCGTGTTTGGATCCCTGTCTCTCTACGCCCTTG
Seq A exon
GTCTGCTGCTACCTTGGCGATGGCTTGCTGTGGCTGGAGAGGGGCCGGTTCTCATCATGATCCTGCTGCTCAGCTTCATGCCCAACTCTCCTCGCTTCTTGCTCTCAAAGAGCCGGGATGAGGAGGCACTGCAGGCGCTGACCTGGCTGCGAGCTGACTCCGAGGTCCATTGGGAGTTTGAGCAGATCCAGGACAACGTGCGGAGACAG
Seq C2 exon
AGTAGCCGAGTGTCGTGGGCGGAAGCCCGGGAACCCCGTGTGTACCGGCCTGTTCTCATTGCAGTACTGATGCGCTTTCTGCAGCAGCTGACAGGCATCACACCCATCCTGGTGTACCTACAGACCATCTTCGACAACACATCCGTGGTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036067-'5-8,'5-7,6-8=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=FE(10.9=100)
A:
PF0008319=Sugar_tr=FE(15.3=100)
C2:
PF0008319=Sugar_tr=FE(11.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTACGTGTCTGAGATTGCACC
R:
CAGCACCACGGATGTGTTGTC
Band lengths:
252-461
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types