GgaEX7010385 @ galGal4
Exon Skipping
Gene
ENSGALG00000007314 | DSCAML1
Description
Down syndrome cell adhesion molecule like 1 [Source:HGNC Symbol;Acc:HGNC:14656]
Coordinates
chr24:5325132-5326168:-
Coord C1 exon
chr24:5325969-5326168
Coord A exon
chr24:5325374-5325470
Coord C2 exon
chr24:5325132-5325260
Length
97 bp
Sequences
Splice sites
3' ss Seq
TGTCCCCAAAATACCCACAGCTG
3' ss Score
6.3
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
TCCCCGCCATGATCACCTCGCACCCCAACACCACCATCGCCATCAAGGGGCAGAGCAAGGAGCTGAACTGCACGGCGCGGGGCGAGCGGCCCATCATCATCCGCTGGGAGAAGGGTGACACCGTCATCGACCCCGACCGCAACATGCGCTACGCCATCGCCACCAAGGACAACGGCGACGAGGTCATCTCCACCCTCAAG
Seq A exon
CTGAAACCCGCTGACCGTGGCGACTCAGTCTTCTTCTCCTGCCATGCCATCAATTCGTACGGCGAGGACAGGGGCCTGATCCAGCTCACTGTGCAAG
Seq C2 exon
AGCCACCTGACCCCCCAGAACTGGAGATCCGCGAGGTGAAAGCCCGCAGCATGAACCTGCGCTGGACGCAGCGCTTTGATGGGAACAGCATCATCACCGGCTTTGACATCGAGTACAAGAACAAGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007314-'13-15,'13-14,14-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.104 A=0.212 C2=0.295
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(66.7=95.5)
A:
PF0767911=I-set=PD(31.2=90.9)
C2:
PF0004116=fn3=PU(47.1=93.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGGTGACACCGTCATCGA
R:
GATGCTGTTCCCATCAAAGCG
Band lengths:
183-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]