BtaEX6058345 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016692 | DSCAML1
Description
Down syndrome cell adhesion molecule like 1 [Source:HGNC Symbol;Acc:HGNC:14656]
Coordinates
chr15:28573702-28575297:-
Coord C1 exon
chr15:28575098-28575297
Coord A exon
chr15:28574447-28574543
Coord C2 exon
chr15:28573702-28573830
Length
97 bp
Sequences
Splice sites
3' ss Seq
CCCCTCGGACTGCCTCCCAGCTC
3' ss Score
5.32
5' ss Seq
AAGGTACCT
5' ss Score
8.49
Exon sequences
Seq C1 exon
TCCCAGCCATGATCACCTCCCACCCCAACACCACCATCGCCATCAAGGGCCACGCCAAGGAGCTCAACTGCACAGCACGAGGCGAGCGACCCATCATTATACGCTGGGAGAAAGGGGACACGGTCATCGACCCCGACCGCGTCATGCGGTATGCCATCGCCACCAAGGACAACGGCGATGAGGTTGTCTCCACGCTGAAG
Seq A exon
CTCAAGCCCGCTGACCGTGGGGACTCTGTGTTCTTCAGCTGCCATGCCATCAACTCATATGGGGAGGACCGGGGCCTGATCCAGCTCACGGTACAAG
Seq C2 exon
AGCCCCCTGACCCCCCAGAGCTGGAAATCCGAGAGGTGAAGGCCCGGAGCATGAACCTGCGCTGGACCCAGAGATTCGATGGGAACAGCATCATCACGGGCTTTGACATTGAGTACAAGAACAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016692-'13-12,'13-11,14-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=0.212 C2=0.273
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(66.7=95.5)
A:
PF0767911=I-set=PD(31.2=90.9)
C2:
PF0004116=fn3=PU(47.1=93.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAAGGGGACACGGTCATC
R:
TCCCATCGAATCTCTGGGTCC
Band lengths:
177-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]