MmuEX6065545 @ mm9
Exon Skipping
Gene
ENSMUSG00000032087 | Dscaml1
Description
Down syndrome cell adhesion molecule like 1 [Source:MGI Symbol;Acc:MGI:2150309]
Coordinates
chr9:45509892-45510739:+
Coord C1 exon
chr9:45509892-45510091
Coord A exon
chr9:45510407-45510503
Coord C2 exon
chr9:45510611-45510739
Length
97 bp
Sequences
Splice sites
3' ss Seq
TCCTGCTGGTCACATCTTAGCTC
3' ss Score
3.48
5' ss Seq
AAGGTACGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
TCCCAGCAATGATCACATCTCACCCCAACACCACGATCGCCATCAAGGGCCACCCCAAGGAGCTGAACTGCACTGCGCGTGGCGAGCGGCCCATCATAATCCGCTGGGAGAAGGGGGACACAGTCATTGATCCCGACCGTGTCATGCGCTATGCCATTGCTACCAAGGACAATGGCGATGAAGTGGTCTCCACGCTTAAG
Seq A exon
CTCAAGCCAGCTGACCGTGGGGACTCCGTGTTCTTCAGCTGCCATGCTATCAACTCATATGGAGAGGACCGAGGTTTGATCCAGCTCACTGTGCAAG
Seq C2 exon
AGCCCCCTGACCCCCCAGAGCTAGAGATCCGGGAGGTGAAGGCCCGGAGCATGAACCTGCGCTGGACTCAGAGATTTGATGGAAACAGCATCATCACCGGCTTTGATATTGAATACAAGAACAAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032087-'18-20,'18-19,19-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.134 A=0.212 C2=0.209
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(66.7=95.5)
A:
PF0767911=I-set=PD(31.2=90.9)
C2:
PF0004116=fn3=PU(47.1=93.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCATTGATCCCGACCGTGTC
R:
CCGGTGATGATGCTGTTTCCA
Band lengths:
178-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: