DreEX0028400 @ danRer10
Exon Skipping
Gene
ENSDARG00000098057 | dscaml1
Description
Down syndrome cell adhesion molecule like 1 [Source:ZFIN;Acc:ZDB-GENE-110601-1]
Coordinates
chr15:12172860-12174355:-
Coord C1 exon
chr15:12174150-12174355
Coord A exon
chr15:12173173-12173269
Coord C2 exon
chr15:12172860-12172988
Length
97 bp
Sequences
Splice sites
3' ss Seq
ACTTTGACAATTTTCTGCAGCTG
3' ss Score
6.81
5' ss Seq
AAGGCAAGA
5' ss Score
2.81
Exon sequences
Seq C1 exon
TTCCAGCTATGATCACATCGCATCCTAACACCACCATGGCCATAAAGGGACAGAACAAGGAGTTAAACTGCACTGCCCGGGGTGAATACCCTATCATCATCCGCTGGGAGCGAGGTGACACCGTTATTGACCCTGACCGCAACCCTCGCTACTCCATCACCACCAGCCCCAATGAGAAGAGCGATGAAGTTATCTCCACACTAAAA
Seq A exon
CTGAAGCCAGCAGAGCGTGGGGATTCTGTCTTTTTCTCCTGCCACGCCATCAACTCATACGGCGAGGGTCGAGGGCTCATCCAGCTGACAGTGCAAG
Seq C2 exon
AACCCCCTGACCCCCCAGAGCTTGAGGTTCGAGAAGTCAAAGATCGTAGTATGAACCTAAGGTGGACGCAGAGGTTTGACGGCAACAGCATAATCACCAGCTATGACATTGAGTACAAGAACAAATCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098057_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.231 A=0.290 C2=0.283
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0004116=fn3=PU(36.1=96.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGAGGTGACACCGTTATTG
R:
TCTGCGTCCACCTTAGGTTCA
Band lengths:
170-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]